class 12: handouts,
ppt, html
positive selection continued
class 11: handouts,
ppt, html
ml-mapping,
positive selection, PAML
class 10: handouts,
ppt, html
phyml,
treepuzzle, ml-mapping
class 9: handouts,
ppt, html
phylip
continued, homework assignments
class 8: handouts,
ppt, html
trees:
what do the mean? phylip continued
class 7: handouts,
ppt, html
vi,
perl, alignment, phylip
class 6: handouts,
ppt, html
sequence
alignment, sequence space
class 5: handouts,
ppt, html
sequence
alignment
class 3 and 4: handouts,
ppt, html
BLAST, PSI BLAST
and the commandline
class 2: handouts,
ppt, html
databank searches,
homology
class 1: handouts,
ppt, html
Student projects,
databanks, blast
Lab
6 : Detecting
positive selection using MrBayes and PAML
Lab
5 : phyml,
treepuzzle, ml-mapping, puzzleboot
Lab
4 : seqboot,
protpars and protdist in phylip
Lab
3 : PSI-Blast
via the commandline, sequence alignment
Lab
2 : Blastall
searches(Cont.) and PSI-Blast
Lab
1 : Databases
and Blastall searches
DISCUSSION
Your questions my answers. You might also get a few comments from me without anyone
having asked a question. If you have questions or comments mail them to gogarten@uconn.edu,
or use the response
page